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1

Accessible Surface Areas as a Measure of the Thermodynamic Parameters of Hydration of Peptides

Tatsuo Ooi, Motohisa Oobatake, George Nemethy and Harold A. Scheraga

Journal:

Proceedings of the National Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 883 KB

english, 1987

2

Thermodynamic databases for proteins and protein–nucleic acid interactions

Akinori Sarai, M. Michael Gromiha, Jianghong An, Ponraj Prabakaran, Samuel Selvaraj, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira

Journal:

Year:

2001

Language:

english

File:

PDF, 464 KB

english, 2001

3

Dispensability of Glutamic Acid 48 and Aspartic Acid 134 for Mn 2+ -Dependent Activity of Escherichia coli Ribonuclease HI †

Tsunaka, Yasuo, Haruki, Mitsuru, Morikawa, Masaaki, Oobatake, Motohisa, Kanaya, Shigenori

Journal:

Year:

2003

Language:

english

File:

PDF, 172 KB

english, 2003

4

Heat denaturation and cold denaturation of Escherichia coli RNase HI investigated by circular dichroism

Tomoko Yamasaki, Shigenori Kanaya, Motohisa Oobatake

Journal:

Thermochimica Acta

Year:

1995

Language:

english

File:

PDF, 607 KB

english, 1995

5

Thermal denaturation of a recombinant mouse amelogenin: Circular dichroism and differential scanning calorimetric studies

Motohisa Oobatake, Tomoko Yamasaki, James P. Simmer, V. Renugopalakrishnan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 341 KB

english, 2006

6

Molecular motion and vibrational dephasing in a model of liquid N 2 O 4

Katō, Toshiko, Oobatake, Motohisa, Machida, Katsunosuke, Hayashi, Soichi

Journal:

Molecular Physics

Year:

1992

Language:

english

File:

PDF, 772 KB

english, 1992

7

Effects of Hydrated Water on Protein Unfolding1

Ooi, Tatsuo, Oobatake, Motohisa

Journal:

Journal of Biochemistry

Year:

1988

Language:

english

File:

PDF, 755 KB

english, 1988

8

Anatomy of specific interactions between λ repressor and operator DNA

Motohisa Oobatake, Hidetoshi Kono, Yifei Wang, Akinori Sarai

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 314 KB

english, 2003

9

Flexibility of bovine pancreatic trypsin inhibitor

Tatsuo Ooi, Ken Nishikawa, Motohisa Oobatake, Harold A. Scheraga

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1978

Language:

english

File:

PDF, 977 KB

english, 1978

10

Intermolecular Interactions between Protein and Other Molecules Including Hydration Effects1

Ooi, Tatsuo, Oobatake, Motohisa

Journal:

Journal of Biochemistry

Year:

1988

Language:

english

File:

PDF, 499 KB

english, 1988

11

An analysis of non-bonded energy of proteins

Motohisa Oobatake, Tatsuo Ooi

Journal:

Journal of Theoretical Biology

Year:

1977

Language:

english

File:

PDF, 1015 KB

english, 1977

12

De novo design and creation of a stable artificial protein

Toshiki Tanaka, Mayumi Hayashi, Hiromi Kimura, Motohisa Oobatake, Haruki Nakamura

Journal:

Biophysical Chemistry

Year:

1994

Language:

english

File:

PDF, 1.15 MB

english, 1994

13

Investigating the role of conserved residue Asp134 in Escherichia coli ribonuclease HI by site-directed random mutagenesis

Mitsuru HARUKI, Eriko NOGUCHI, Chieko NAKAI, Yu-Ying LIU, Motohisa OOBATAKE, Mitsuhiro ITAYA, Shigenori KANAYA

Journal:

Year:

1994

Language:

english

File:

PDF, 1.26 MB

english, 1994

14

Molecular dynamics of thermal dissociation in liquid N2O4

Katō, Toshiko, Hayashi, Soichi, Oobatake, Motohisa, Machida, Katsunosuke

Journal:

The Journal of Chemical Physics

Year:

1994

Language:

english

File:

PDF, 1.23 MB

english, 1994

15

Interpretation for the anomaly of the C=O stretching band in benzoic acid crystal

Hayashi, Soichi, Oobatake, Motohisa, Nakamura, Ryoko, Machida, Katsunosuke

Journal:

The Journal of Chemical Physics

Year:

1991

Language:

english

File:

PDF, 834 KB

english, 1991

16

pH-Dependent thermostabilization of Escherichia coli ribonuclease HI by histidine to alanine substitutions

Shigenori Kanaya, Motohisa Oobatake, Haruki Nakamura, Morio Ikehara

Journal:

Journal of Biotechnology

Year:

1993

Language:

english

File:

PDF, 1.03 MB

english, 1993

17

Ionic dynamics in computer simulated molten LiNO3. I. Translational and reorientational motion

Katō, Toshiko, Machida, Katsunosuke, Oobatake, Motohisa, Hayashi, Soichi

Journal:

The Journal of Chemical Physics

Year:

1988

Language:

english

File:

PDF, 870 KB

english, 1988

18

Characteristic Thermodynamic Properties of Hydrated Water for 20 Amino Acid Residues in Globular Proteins1

Oobatake, Motohisa, Ooi, Tatsuo

Journal:

Journal of Biochemistry

Year:

1988

Language:

english

File:

PDF, 649 KB

english, 1988

19

Characterization of the internal motions of Escherichia coli ribonuclease HI by a combination of 15N-NMR relaxation analysis and molecular dynamics simulation: examination of dynamic models

Yamasaki, Kazuhiko, Saito, Minoru, Oobatake, Motohisa, Kanaya, Shigenori

Journal:

Year:

1995

Language:

english

File:

PDF, 2.34 MB

english, 1995

20

Pressure-Denatured State of Escherichia c oli Ribonuclease HI As Monitored by Fourier Transform Infrared and NMR Spectroscopy †

Yamasaki, Kazuhiko, Taniguchi, Yoshihiro, Takeda, Naohiro, Nakano, Kayoko, Yamasaki, Tomoko, Kanaya, Shigenori, Oobatake, Motohisa

Journal:

Year:

1998

Language:

english

File:

PDF, 167 KB

english, 1998

21

Salt-dependent monomer–dimer equilibrium of bovine β-lactoglobulin at pH 3

Kazumasa Sakurai, Motohisa Oobatake, Yuji Goto

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 246 KB

english, 2001

22

Molecular dynamics study of the spectroscopic properties of liquid benzene

NAKAGAWA, TETSUO, UMEMURA, JUNZO, HAYASHI, SOICHI, OOBATAKE, MOTOHISA, MIWA, YOSHIHISA, MACHIDA, KATSUNOSUKE

Journal:

Molecular Physics

Year:

1996

Language:

english

File:

PDF, 418 KB

english, 1996

23

Acid-induced denaturation of Escherichia coli ribonuclease HI analyzed by CD and NMR spectroscopies

Kazuhiko Yamasaki, Tomoko Yamasaki, Shigenori Kanaya, Motohisa Oobatake

Journal:

Year:

2003

Language:

english

File:

PDF, 234 KB

english, 2003

24

Thermal unfolding of tetrameric melittin: Comparison with the molten globule state of cytochrome c

Yoshihisa Hagihara, Motohisa Oobatake, Yuji Goto

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 1.14 MB

english, 1994

25

Prediction of the Thermodynamics of Protein Unfolding: The Helix-Coil Transition of Poly(L-Alanine)

Tatsuo Ooi and Motohisa Oobatake

Journal:

Proceedings of the National Academy of Sciences

Year:

1991

Language:

english

File:

PDF, 832 KB

english, 1991

26

Thermodynamic characterization of an artificially designed amphiphilic α-helical peptide containing periodic prolines: Observations of high thermal stability and cold denaturation

Eiichi Kitakuni, Yutaka Kuroda, Motohisa Oobatake, Toshiki Tanaka, Haruki Nakamura

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 640 KB

english, 1994

27

Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-ray Structural Analysis of the Five Isoleucine to Valine Mutants

Kazufumi Takano, Kyoko Ogasahara, Hidetomo Kaneda, Yuriko Yamagata, Satoshi Fujii, Eiko Kanaya, Masakazu Kikuchi, Motohisa Oobatake, Katsuhide Yutani

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 815 KB

english, 1995

28

Importance of Surrounding Residues for Protein Stability of Partially Buried Mutations

Gromiha, M. Michael, Oobatake, Motohisa, Kono, Hidetoshi, Uedaira, Hatsuho, Sarai, Akinori

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2000

Language:

english

File:

PDF, 220 KB

english, 2000

29

Vibrational dephasing in computer simulated molten LiNO3

Katō, Toshiko, Machida, Katsunosuke, Oobatake, Motohisa, Hayashi, Soichi

Journal:

The Journal of Chemical Physics

Year:

1990

Language:

english

File:

PDF, 826 KB

english, 1990

30

Large permittivity of computer simulated liquid cyanogen

Kita, Yasuo, Kiyohara, Kenji, Oobatake, Motohisa, Hayashi, Soichi, Machida, Katsunosuke

Journal:

The Journal of Chemical Physics

Year:

1994

Language:

english

File:

PDF, 730 KB

english, 1994

31

Hydration of Apomyoglobin in Native, Molten Globule, and Unfolded States by Using Microwave Dielectric Spectroscopy

Kamei, Takashi, Oobatake, Motohisa, Suzuki, Makoto

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 150 KB

english, 2002

32

Importance of mutant position in Ramachandran plot for predicting protein stability of surface mutations

M. Michael Gromiha, Motohisa Oobatake, Hidetoshi Kono, Hatsuho Uedaira, Akinori Sarai

Journal:

Year:

2002

Language:

english

File:

PDF, 134 KB

english, 2002

33

Folding Pathway of Escherichia coli Ribonuclease HI: A Circular Dichroism, Fluorescence, and NMR Study

Yamasaki, Kazuhiko, Ogasahara, Kyoko, Yutani, Katsuhide, Oobatake, Motohisa, Kanaya, Shigenori

Journal:

Year:

1995

Language:

english

File:

PDF, 1.99 MB

english, 1995

34

Ionic dynamics in computer simulated molten LiNO3. III. Effect of the potential well on the translational and reorientational motions

Katō, Toshiko, Machida, Katsunosuke, Oobatake, Motohisa, Hayashi, Soichi

Journal:

The Journal of Chemical Physics

Year:

1990

Language:

english

File:

PDF, 924 KB

english, 1990

35

Ionic dynamics in computer simulated molten LiNO3. II. Tumbling and spinning motions of nitrate ions

Katō, Toshiko, Machida, Katsunosuke, Oobatake, Motohisa, Hayashi, Soichi

Journal:

The Journal of Chemical Physics

Year:

1988

Language:

english

File:

PDF, 740 KB

english, 1988

36

Design and synthesis of an α-helical peptide containing periodic proline residues

Eiichi Kitakuni, Tokio Horiuchi, Yasushi Oda, Motohisa Oobatake, Haruki Nakamura, Toshiki Tanaka

Journal:

Year:

1992

Language:

english

File:

PDF, 412 KB

english, 1992

37

Hydration and heat stability effects on protein unfolding

Motohisa Oobatake, Tatsuo Ooi

Journal:

Progress in Biophysics and Molecular Biology

Year:

1993

Language:

english

File:

PDF, 2.92 MB

english, 1993

38

Determination of Energy Parameters in Lennard-Jones Potentials from Second Virial Coefficients

Oobatake, Motohisa, Ooi, Tatsuo

Journal:

Progress of Theoretical Physics

Year:

1972

Language:

english

File:

PDF, 1.17 MB

english, 1972

39

Residue-residue potential function for conformational analysis of proteins

Oobatake, Motohisa, Crippen, Gordon M.

Journal:

Journal of Physical Chemistry

Year:

1981

Language:

english

File:

PDF, 1.20 MB

english, 1981

40

Relationship Between Amino Acid Properties and Protein Stability: Buried Mutations

M. Michael Gromiha, Motohisa Oobatake, Hidetoshi Kono, Hatsuho Uedaira, Akinori Sarai

Journal:

The Protein Journal

Year:

1999

Language:

english

File:

PDF, 958 KB

english, 1999

41

Molecular dynamics simulation of infrared spectra and average structure of benzoic acid crystal

Nakamura, Ryoko, Machida, Katsunosuke, Oobatake, Motohisa, Hayashi, Soichi

Journal:

Molecular Physics

Year:

1988

Language:

english

File:

PDF, 684 KB

english, 1988

42

Folding Pathway of Escherichia coli Ribonuclease HI: A Circular Dichroism, Fluorescence, and NMR Study

Yamasaki, Kazuhiko, Ogasahara, Kyoko, Yutani, Katsuhide, Oobatake, Motohisa, Kanaya, Shigenori

Journal:

Year:

1996

File:

PDF, 48 KB

1996

43

Molecular Dynamics Using Internal Coordinates. I. Infrared Spectra of Sulfur Dioxide

Hayashi, Soichi, Oobatake, Motohisa, Ooi, Tatsuo, Machida, Katsunosuke

Journal:

Bulletin of the Chemical Society of Japan

Year:

1985

File:

PDF, 597 KB

1985

44

Molecular Orientation of Plastocyanin on Spinach Thylakoid Membranes as Determined by Acetylation of Lysine Residues

TAKANO, Makoto, TAKAHASHI, Masa-aki, OOBATAKE, Motohisa, ASADA, Kozi

Journal:

Journal of Biochemistry

Year:

1985

Language:

english

File:

PDF, 567 KB

english, 1985

45

Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins

M.Michael Gromiha, Motohisa Oobatake, Akinori Sarai

Journal:

Biophysical Chemistry

Year:

1999

Language:

english

File:

PDF, 209 KB

english, 1999

46

High Resistance of Escherichia coli Ribonuclease HI Variant with Quintuple Thermostabilizing Mutations to Thermal Denaturation, Acid Denaturation, and Proteolytic Degradation

Akasako, Atsuko, Haruki, Mitsuru, Oobatake, Motohisa, Kanaya, Shigenori

Journal:

Year:

1995

Language:

english

File:

PDF, 942 KB

english, 1995

47

Cation dependence of the ionic dynamics in computer simulated molten nitrates

Katō, Toshiko, Hayashi, Soichi, Oobatake, Motohisa, Machida, Katsunosuke

Journal:

The Journal of Chemical Physics

Year:

1993

Language:

english

File:

PDF, 918 KB

english, 1993

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